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Figure 2
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2A
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(R) and (S) 2-bromo-butane, small molecule exported from VMD
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2B
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PDB entries 1vyq and 1fjl exported from VMD
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2C
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Bacteriophage attached to host membrane from EDMB 9010, exported from VMD
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2D
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Xray electron density and modeled peptide from PDB 3hyd, exported from VMD as an interactive app
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2E
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Frontier molecular orbitals of BH3 and NH3, exported from VMD as an interactive app
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2F
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An amphipathic protein alpha helix
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2G
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Load any molecule in PDB format - [Video]
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Figure 3
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3A
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Two small molecules, with clash detection and emulation of proton transfer - [Video]
Variation for phones, that vibrates upon clashes [Link] - [Video]
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3B
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Emulation of a Diels-Alder reaction - [Video with explanations] - [Video update with better graphics]
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3C
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On-the-fly calculation of pseudocontact shifts - [Video]
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Figure 4
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4A
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SAXS profile of two interacting proteins - [Video with explanations] - [Video update with better graphics]
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4B-C
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Mapping of contact predictions between two proteins
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Figure 5
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5A-C
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Two proteins joined by a highly flexible linker - [Video] - [Video update with better graphics]
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