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Search protein sequence in databases of 3D models

Search >5000 models from contact prediction-based datasets, CASP, literature, PDB-Dev and SASBDB.

Search also ModBase, SwissModel's repository and the Model Archive through the Protein Model Portal; and the Protein Data Bank, all right from here.

... or load from file:

In-browser queries: (hover over buttons to get more information)

Search filters
Fraction internal gaps below % (0 - 100)
Similarity above % (0 - 100)
Cover at least % of the sequence (0 - 100)

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References

Search scripts adapted from the Sequence Manipulation Suite; Stothard P (2000) The Sequence Manipulation Suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 28:1102-1104
All code written in HTML and JavaScript. To know more about their use in science, see this and this reviews
Gremlin resources: server, Elife 2015 paper and Science 2017 paper
CASP website and data archive
Protein Model Portal server and paper
Model Archive server and paper
ModBase server and paper
PDB-Dev server and paper
PconsC3 server and paper
DMPfold main site and paper
Tara-3D main site and paper
SASBDB server and paper
My Gallery of Biomolecular Models from my publications
CERN-based Zenodo, where even some molecular dynamics trajectories have been published