Filter Alignment into a smaller Alignment

This tool reads in an alignment and outputs a shorter version built by filtering by sequence similarity so that it can then be analyzed with other programs like MultiProtScale.

Paste your sequences or alignment below, select an amino acid descriptor and click Run.

Load from file:
Sample data sets:

Get alignments from EVFold or Gremlin, sites which
also compute consistency with structures. Other tools here

Filter by:

Standard amino acid similarity
Retain at similarity (0-1, smaller retains less)
Score for perfect matches = 1 (cannot change)
Score for mismatches between similar amino acids =

(Other options, based on specific descriptors, to come)

This output text contains the filtered alignment. You can copy it by selecting and hitting ctrl+c.