This tool helps to inspect the contact predictions from RaptorX's analysis of a multiple sequence alignment, in comparison to a provided structure or model.
Step 1: Paste Contact Predictions here
Step 2: Paste PDB ATOM records here
Sample data sets:
Load from file:
Load from file:
(Optional) PDB text of monomer (only ATOM lines)
(Optional) PDB text of other copies pf the molecule (only ATOM lines)
Step 3: Filter all evolutionary couplings above threshold and create interactive plots
(Rec. small)
Input your data above and click Run.
Result: Overlay of Evolutionary Couplings and Protein Structure
List of all transferred residue pairs
Commands to transfer residue pairs
=========
Transfer specific residue pairs here
Visualization controls
Cutoff for showing evolutionary couplings:
Minimal distance between residues to plot:
Cutoff distance between heavy atoms to consider contacts (Å):
Offset between residue numbering in protein structure and in evolutionary data:
on residues
to
Move mouse over plot to see current pair of residues
